PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054355
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 139aa    MW: 16124.7 Da    PI: 9.8655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054355genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.31.3e-2752116159
                           ---SS-EEEEEEE--TT-SS-E......EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefpr......sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg++WrKYG+K+vk+s +pr      +YY+C+s gC+vkk+ver++ed ++v++tYeg Hnhe
  PGSC0003DMP400054355  52 LDDGFKWRKYGKKMVKNSSNPReifmngNYYKCSSGGCNVKKRVERDNEDSSYVITTYEGIHNHE 116
                           59********************5555555***********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-2938118IPR003657WRKY domain
SuperFamilySSF1182901.05E-2445118IPR003657WRKY domain
PROSITE profilePS5081126.16547118IPR003657WRKY domain
SMARTSM007741.6E-3252117IPR003657WRKY domain
PfamPF031067.5E-2053116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MKLFKVFPIV VDHIQIIPLQ QVITCKKCMK GVKKVDAKSR VAFRFRSELE VLDDGFKWRK  60
YGKKMVKNSS NPREIFMNGN YYKCSSGGCN VKKRVERDNE DSSYVITTYE GIHNHESPYV  120
FHYTQFPPNN IALHNLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-21471181277Probable WRKY transcription factor 4
2lex_A3e-21471181277Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754439e-94HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160883.15e-93PREDICTED: probable WRKY transcription factor 51 isoform X2
SwissprotQ8VWQ51e-34WRK50_ARATH; Probable WRKY transcription factor 50
SwissprotQ93WU91e-34WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLM1D3151e-101M1D315_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000801281e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-36WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]